PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000061.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 205aa    MW: 22890.8 Da    PI: 7.9658
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000061.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.15.4e-30118754129
                      NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                              ++kewyfFs rd+kyatg r+nrat+ gyWk tgkd+++l+  +g++ g++ktLvfy+ rap+g+ktdW+mhe+rle
  Itr_sc000061.1_g00003.1  11 NSKEWYFFSFRDRKYATGYRSNRATSCGYWKGTGKDRRILDPaTGTVLGMRKTLVFYHHRAPHGVKTDWIMHEFRLE 87 
                              678**************************************978889***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.6631105IPR003441NAC domain
SuperFamilySSF1019411.26E-368105IPR003441NAC domain
PfamPF023657.1E-151486IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTFGRYVAKL NSKEWYFFSF RDRKYATGYR SNRATSCGYW KGTGKDRRIL DPATGTVLGM  60
RKTLVFYHHR APHGVKTDWI MHEFRLENPH IPPKEDWVLC RVFQKSKAAG ICDDSIVGAA  120
AGASTSSPNA VNNALLPAGY SPMSGVPAGN VGMAQSKREE DDEYGFFFNV LNCEEPNFQA  180
ADGGVPLWID EDFRFDNGGN GLLFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D5e-28810969172NAC domain-containing protein 19
3swp_C5e-28810969172NAC domain-containing protein 19
3swp_B5e-28810969172NAC domain-containing protein 19
3swp_A5e-28810969172NAC domain-containing protein 19
3swm_D5e-28810969172NAC domain-containing protein 19
3swm_C5e-28810969172NAC domain-containing protein 19
3swm_B5e-28810969172NAC domain-containing protein 19
3swm_A5e-28810969172NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016576082.12e-64PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ84TE66e-43NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLK4C3L64e-62K4C3L6_SOLLC; Uncharacterized protein
TrEMBLM1CE895e-62M1CE89_SOLTU; Uncharacterized protein
STRINGSolyc06g008360.2.11e-61(Solanum lycopersicum)
STRINGPGSC0003DMT4000655591e-61(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.18e-56NAC domain containing protein 74